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cdhit/doc/cdhit-user-guide.wiki at master · weizhongli/cdhit · GitHub
cdhit/doc/cdhit-user-guide.wiki at master · weizhongli/cdhit · GitHub

How to cluster peptide/protein sequences using cd-hit software? —  Bioinformatics Review
How to cluster peptide/protein sequences using cd-hit software? — Bioinformatics Review

Cd-hit: a fast program for clustering and comparing large sets of protein  or nucleotide sequences.
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.

Frontiers | Comparison of Methods for Picking the Operational Taxonomic  Units From Amplicon Sequences
Frontiers | Comparison of Methods for Picking the Operational Taxonomic Units From Amplicon Sequences

Comparison of Methods for Biological Sequence Clustering
Comparison of Methods for Biological Sequence Clustering

Sensitive clustering of protein sequences at tree-of-life scale using  DIAMOND DeepClust | bioRxiv
Sensitive clustering of protein sequences at tree-of-life scale using DIAMOND DeepClust | bioRxiv

Frontiers | Comparison of Methods for Picking the Operational Taxonomic  Units From Amplicon Sequences
Frontiers | Comparison of Methods for Picking the Operational Taxonomic Units From Amplicon Sequences

Index of /~psgendb/birchhomedir/FTP/doc/cd-hit
Index of /~psgendb/birchhomedir/FTP/doc/cd-hit

PDF) CD-HIT: Accelerated for clustering the next-generation sequencing data
PDF) CD-HIT: Accelerated for clustering the next-generation sequencing data

Analysis and comparison of very large metagenomes with fast clustering and  functional annotation Weizhong Li, BMC Bioinformatics 2009 Present by  Chuan-Yih. - ppt download
Analysis and comparison of very large metagenomes with fast clustering and functional annotation Weizhong Li, BMC Bioinformatics 2009 Present by Chuan-Yih. - ppt download

USEARCH performance
USEARCH performance

CD-HIT and USEARCH report different %ids
CD-HIT and USEARCH report different %ids

CD-HIT User's Guide
CD-HIT User's Guide

Swarm: robust and fast clustering method for amplicon-based studies [PeerJ]
Swarm: robust and fast clustering method for amplicon-based studies [PeerJ]

How to cluster peptide/protein sequences using cd-hit software? —  Bioinformatics Review
How to cluster peptide/protein sequences using cd-hit software? — Bioinformatics Review

Clustering
Clustering

EdClust: A heuristic sequence clustering method with higher sensitivity
EdClust: A heuristic sequence clustering method with higher sensitivity

Fast Program for Clustering and Comparing Large Sets of Protein or  Nucleotide Sequences | SpringerLink
Fast Program for Clustering and Comparing Large Sets of Protein or Nucleotide Sequences | SpringerLink

MeShClust: an intelligent tool for clustering DNA sequences | bioRxiv
MeShClust: an intelligent tool for clustering DNA sequences | bioRxiv

Clustering biological sequences with dynamic sequence similarity threshold  | BMC Bioinformatics | Full Text
Clustering biological sequences with dynamic sequence similarity threshold | BMC Bioinformatics | Full Text

An example illustrating how the CD-HIT main paradigm works. Record 1 is...  | Download Scientific Diagram
An example illustrating how the CD-HIT main paradigm works. Record 1 is... | Download Scientific Diagram

Figure 2 from A RNA Virus Reference Database (RVRD) to Enhance Virus  Detection in Metagenomic Data | Semantic Scholar
Figure 2 from A RNA Virus Reference Database (RVRD) to Enhance Virus Detection in Metagenomic Data | Semantic Scholar

An example illustrating how the CD-HIT main paradigm works. Record 1 is...  | Download Scientific Diagram
An example illustrating how the CD-HIT main paradigm works. Record 1 is... | Download Scientific Diagram

kClust: fast and sensitive clustering of large protein sequence databases |  BMC Bioinformatics | Full Text
kClust: fast and sensitive clustering of large protein sequence databases | BMC Bioinformatics | Full Text

CD-HIT User's Guide
CD-HIT User's Guide

Genes | Free Full-Text | Ensemble-AMPPred: Robust AMP Prediction and  Recognition Using the Ensemble Learning Method with a New Hybrid Feature  for Differentiating AMPs
Genes | Free Full-Text | Ensemble-AMPPred: Robust AMP Prediction and Recognition Using the Ensemble Learning Method with a New Hybrid Feature for Differentiating AMPs